PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0039ss01480.1
Common NameLR48_Vigan05g065800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 464aa    MW: 51097.8 Da    PI: 4.358
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0039ss01480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14e-133582146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H..HHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl..kqcksrwqk 46
                       +g+WT+ Ed +lvd+v+ +G g+W+++ ++ g+ R++  +++k++w++
  Vang0039ss01480.1 35 KGPWTAAEDVILVDYVNTHGEGNWNAVQKYSGLSRCGknNEIKNYWNT 82
                       79******************************888873368*****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8633088IPR017930Myb domain
SuperFamilySSF466895.16E-113389IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-153385IPR009057Homeodomain-like
SMARTSM007171.0E-93486IPR001005SANT/Myb domain
PfamPF002491.4E-103582IPR001005SANT/Myb domain
CDDcd001671.48E-83782No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MGQMTHEIDD TVHGKNQTGS RLNDGGIGGG VVLKKGPWTA AEDVILVDYV NTHGEGNWNA  60
VQKYSGLSRC GKNNEIKNYW NTRMKRRQRA GLPLYPPEVV LQAFQDNKHD QGTAEISDGD  120
GGHQDFMEKN NYEIHDAIYD SLKENQGILP FVPQLPDISA NSILPNVLGS PPYCNFLPST  180
LPNHDHLQES SVSFIGSNEL NSNGFYPFDH FKDNTSDKIA ESFGLHSPLD HGASSYGSIC  240
YSHSISNDNY STSKLASEAV KSELPSLQYP ETEFGSWGTS PPPPLNDSTD VFIHSPQPPY  300
ALDSGSSSSL TRCFLNEFLY QQAKTLGYSN NNWPESSNSS IATPVDGAES SALNMYETEW  360
EDYADPVSSF GATSILNEHP VVGTNGKPWD GWEPFQTFSG NNVKLQSVEV SAPMSENQSM  420
SMSLLNLTWP DVLLASDWHE LYSEHNNMNQ ADMIDASDNF TRQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498875.10.0PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_014498876.10.0PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_014498878.10.0PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_014498879.10.0PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_014498880.10.0PREDICTED: transcription factor GAMYB-like isoform X1
TrEMBLA0A0L9UKH70.0A0A0L9UKH7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SIX90.0A0A0S3SIX9_PHAAN; Uncharacterized protein
STRINGGLYMA04G15150.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.32e-50myb domain protein 33
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]